Information for 1-CGCCCTCTRSTGGCCM (Motif 1)

A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
Reverse Opposite:
A C G T T C A G C A T G G A T C A G T C G T C A T A G C G A T C C G T A A C T G C T G A A C T G A C T G C T A G T G A C C T A G
p-value:1e-44
log p-value:-1.018e+02
Information Content per bp:1.718
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif67.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets53.6 +/- 21.2bp
Average Position of motif in Background48.6 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCTCTRSTGGCCM
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.91
Offset:-6
Orientation:forward strand
Alignment:------CGCCCTCTRSTGGCCM
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CGCCCTCTRSTGGCCM
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CGCCCTCTRSTGGCCM
GGTCCCGCCCCCTTCTC----
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGCCCTCTRSTGGCCM
-GCCATCTGTT-----
 A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGCCCTCTRSTGGCCM
--CCCCCTGCTGTG--
 A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGCCCTCTRSTGGCCM
-ACCATCTGTT-----
 A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGCCCTCTRSTGGCCM
TGWCCTCARNTGACC-
 A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGCCCTCTRSTGGCCM
GGCCYCCTGCTGDGH-
 A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGCCCTCTRSTGGCCM
GCCGCCATCTTG------
 A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G A T C G A C G T A C T G C A T G G A T C A G T C T G C A
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T