Information for 14-CAGTGACCAT (Motif 27)

A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G
p-value:1e-7
log p-value:-1.633e+01
Information Content per bp:1.925
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets51.6 +/- 31.0bp
Average Position of motif in Background49.8 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CAGTGACCAT--
--NTGACCTTGA
 A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAGTGACCAT
--GTGACCTT
 A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAGTGACCAT
AGGTCANTGACCTN
 A C G T A C G T A C G T A C G T A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Esrrg/MA0643.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAGTGACCAT--
--ATGACCTTGA
 A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAGTGACCAT
---TGACCT-
 A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGTGACCAT-----
NNNGTGACCTTTGNNN
 A C G T A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGTGACCAT-----
NNNNTGACCTTTNNNN
 A C G T A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAGTGACCAT--
-NATGACCTTGA
 A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAGTGACCAT
NCGTGACN--
 A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CAGTGACCAT---
---TGACCTTGAT
 A G T C C G T A C T A G A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T