Information for 1-AAGTTCCASVACAATG (Motif 1)

C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G
Reverse Opposite:
A T G C G C T A A G C T A C G T A C T G G C A T A C T G A T G C G A C T A C T G C A T G C G T A C T G A G T A C C A G T A C G T
p-value:1e-10
log p-value:-2.466e+01
Information Content per bp:1.611
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif55.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets59.2 +/- 24.9bp
Average Position of motif in Background49.1 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AAGTTCCASVACAATG
-ATTTGCATAACAATG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G
A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG
-ATTTGCATAACAAAG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G
A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.65
Offset:9
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG--
---------GACAATGNN
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG-
-------AAAACAATGG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG-
-------VRRACAAWGG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG-
-------VRAACAATGG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAGTTCCASVACAATG----
---TCACGGAACAATAGGTG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG-
-------RNAACAATGG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.62
Offset:10
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG
----------ACAAAG
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:AAGTTCCASVACAATG--
--------GAACAATGGN
 C G T A G T C A A C T G A G C T C G A T G T A C G T A C C G T A A T C G T A G C C G T A T G A C G T C A T C G A C G A T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G