Information for 6-TAGCTATAAA (Motif 10)

C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A
Reverse Opposite:
C G A T A C G T A C G T C G T A A C G T G T C A A T C G A T G C G A C T C G T A
p-value:1e-8
log p-value:-1.953e+01
Information Content per bp:1.855
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif6.81%
Number of Background Sequences with motif366.4
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets41.4 +/- 29.2bp
Average Position of motif in Background49.5 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TAGCTATAAA-
AAGCCATAAAA
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:TAGCTATAAA-
--GCAATAAAA
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TAGCTATAAA---
-NGYCATAAAWCH
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TAGCTATAAA--
--GTCATAAAAN
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TAGCTATAAA--------
---GTATAAAAGGCGGGG
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TAGCTATAAA--------
---GTATAAAAGGCGGGG
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TAGCTATAAA--
-GGTAATAAAAA
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TAGCTATAAA-----
AGAGCCATAAAATTCG
 A C G T C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TAGCTATAAA--
--CCAATAAAAA
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TAGCTATAAA--
--CCAATAAAAC
 C G A T C T G A A T C G A T G C C A G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C