Information for 1-CCTGACTTGRCTAGGT (Motif 1)

A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
Reverse Opposite:
C G T A G T A C T A G C A C G T T C G A C A T G A G C T A G T C G T C A C T G A A C T G A G C T A T G C C G T A C T A G A C T G
p-value:1e-10
log p-value:-2.419e+01
Information Content per bp:1.708
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.60%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.8 +/- 25.8bp
Average Position of motif in Background43.9 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZEB1/MA0103.2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTGACTTGRCTAGGT
CCTCACCTG-------
 A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTGACTTGRCTAGGT
TGWCCTCARNTGACC----
 A C G T A C G T A C G T A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACTTGRCTAGGT
NNNNTGACCCGGCGCG--
 A C G T A C G T A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGACTTGRCTAGGT
--TGACCTYA------
 A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCTGACTTGRCTAGGT
NCGTGACN---------
 A C G T A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACTTGRCTAGGT
NNCNTGACCCCGCTCT--
 A C G T A C G T A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CCTGACTTGRCTAGGT
TGACCTTGACCT--------
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCTGACTTGRCTAGGT
--TGACCTTGAT----
 A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCTGACTTGRCTAGGT
--TCACGTGACCGG--
 A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
A C G T A C G T A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCTGACTTGRCTAGGT
--TGACCT--------
 A G T C A G T C A C G T A T C G C T G A A G T C G A C T A C G T A C T G C T G A G A T C A C G T T C G A A T C G C A T G A C G T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T