Information for 6-AACTHAVGBTCACATA (Motif 7)

C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A
Reverse Opposite:
G A C T C T G A G C A T C A T G A C G T C T A G C T G A T G C A A T G C A C G T G C A T C G A T G C T A C A T G C A G T G C A T
p-value:1e-6
log p-value:-1.453e+01
Information Content per bp:1.619
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif152.1
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets45.0 +/- 25.7bp
Average Position of motif in Background52.9 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF2/MA0526.1/Jaspar

Match Rank:1
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:AACTHAVGBTCACATA--
-------GGTCACATGAC
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

USF1/MA0093.2/Jaspar

Match Rank:2
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:AACTHAVGBTCACATA--
-------GGTCACGTGGC
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:AACTHAVGBTCACATA-
---------BCMATTAG
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.51
Offset:8
Orientation:forward strand
Alignment:AACTHAVGBTCACATA-
--------ACCACTTAA
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

HLTF/MA0109.1/Jaspar

Match Rank:5
Score:0.51
Offset:9
Orientation:forward strand
Alignment:AACTHAVGBTCACATA---
---------AACCTTATAT
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

NFIL3/MA0025.1/Jaspar

Match Rank:6
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AACTHAVGBTCACATA-
------ANGTTACATAA
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T T C A G A G C T A C G T C G T A A G T C C T G A C G A T G T C A C G T A

Nkx2-5/MA0063.1/Jaspar

Match Rank:7
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:AACTHAVGBTCACATA-
----------CAATTAA
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.50
Offset:8
Orientation:forward strand
Alignment:AACTHAVGBTCACATA-
--------ACCACTTAA
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

ISL2/MA0914.1/Jaspar

Match Rank:9
Score:0.49
Offset:9
Orientation:forward strand
Alignment:AACTHAVGBTCACATA-
---------GCACTTAA
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:AACTHAVGBTCACATA-----
----CTTAACCACTTAAGGAT
 C G T A G T C A G T A C C G A T G C T A C G T A T G C A T A C G A C G T G A C T G A T C G T C A G T A C C G T A G A C T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T