Information for 2-CAKGCTGCTTCSCCAC (Motif 5)

A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
Reverse Opposite:
A T C G G A C T A C T G A T C G T A G C T A C G C G T A C G T A A C T G A G T C C G T A A C T G A G T C G T C A A C G T A T C G
p-value:1e-10
log p-value:-2.480e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 21.0bp
Average Position of motif in Background37.3 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAKGCTGCTTCSCCAC
CCTGCTGAGH------
 A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGCTTCSCCAC
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.56
Offset:-9
Orientation:forward strand
Alignment:---------CAKGCTGCTTCSCCAC
ACTYKNATTCGTGNTACTTC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGCTTCSCCAC
TNTCCTGCTGTGNNG----
 A C G T A C G T A C G T A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAKGCTGCTTCSCCAC
AGATGCTRCTRCCHT--
 A C G T A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAKGCTGCTTCSCCAC
NNTCCTGCTGTGNNN----
 A C G T A C G T A C G T A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAKGCTGCTTCSCCAC
--NGCTN---------
 A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CAKGCTGCTTCSCCAC
------GCTTCC----
 A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CAKGCTGCTTCSCCAC
-CAGCTGTTTCCT---
 A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
A C G T G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CAKGCTGCTTCSCCAC
-CAGCTGNT-------
 A T G C G T C A A C G T A C T G A G T C C G A T A C T G A G T C A C G T A C G T A G T C A T C G A T G C A G T C C G T A A T G C
A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T