Information for 2-CGTGATGGCG (Motif 4)

A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G
Reverse Opposite:
G T A C A C T G A G T C A T G C G T C A A G C T A G T C C G T A A G T C T C A G
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.851
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif60.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets54.9 +/- 21.5bp
Average Position of motif in Background54.2 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGTGATGGCG---
--TAATGGCGGNC
 A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGTGATGGCG--
CAAGATGGCGGC
 A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G A C G T A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Atf3/MA0605.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CGTGATGGCG-
---GATGACGT
 A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G A C G T
A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTGATGGCG--
CAAGATGGCGGC
 A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Mitf/MA0620.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGTGATGGCG
NCACGTGACN---
 A C G T A C G T A C G T A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G
A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGTGATGGCG-------
NAGANTGGCGGGGNGNA
 A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGTGATGGCG
GTTAATGGCC
 A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

GLI2/MA0734.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGTGATGGCG
CAGTGTGGTCGC-
 A C G T A C G T A C G T A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T

MLX/MA0663.1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CGTGATGGCG
ATCACGTGAT----
 A C G T A C G T A C G T A C G T A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G
C T G A A C G T A G T C C T G A A G T C C A T G C G A T C A T G C T G A G A C T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGTGATGGCG-
--TNNGGGCAG
 A G T C T C A G C G A T A C T G C T G A A C G T A T C G A C T G A G T C A C T G A C G T
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G