Information for 3-GCAGGATCCTGTNTTT (Motif 3)

C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
Reverse Opposite:
C G T A C T G A C G T A A T C G C G T A A G T C C T G A C T A G A C T G C G T A A G C T A G T C A T G C A C G T C T A G G A T C
p-value:1e-9
log p-value:-2.160e+01
Information Content per bp:1.661
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif30.77%
Number of Background Sequences with motif18.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets42.6 +/- 29.6bp
Average Position of motif in Background54.6 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGATCCTGTNTTT
ANCAGGATGT-------
 A C G T C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGATCCTGTNTTT
CTACTAGGATGTNNTN---
 A C G T A C G T A C G T C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C A C G T A C G T A C G T

PB0162.1_Sfpi1_2/Jaspar

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCAGGATCCTGTNTTT-
---GGTTCCNNAATTTG
 C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T A C G T
A C G T A C G T A C G T C A T G A C T G C G A T G C A T A G T C A G T C A C T G C A T G G C T A C G T A C G A T G A C T C A G T C A T G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAGGATCCTGTNTTT
AGATGCTRCTRCCHT-
 C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GCAGGATCCTGTNTTT
AACAGGAAGT-------
 A C G T C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:6
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCAGGATCCTGTNTTT
ACAGGATGTGGT----
 C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T

SOX8/MA0868.1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GCAGGATCCTGTNTTT
AACAATGTGCAGTGTT-
 A C G T C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
C G T A C G T A G T A C C T G A C G T A A C G T C T A G C G A T A C T G A G T C C G T A C A T G A C G T A C T G C G A T A G C T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGATCCTGTNTTT
NDCAGGAARTNN-----
 A C G T C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GCAGGATCCTGTNTTT
TATTCAAGGTCATGCGA--
 A C G T A C G T A C G T C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A A C G T A C G T

JUN/MA0488.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GCAGGATCCTGTNTTT
--AAGATGATGTCAT-
 C T A G A G T C C G T A T A C G C T A G C T G A A C G T T A G C G A T C A G C T C T A G G C A T A T G C G C A T A G C T G A C T
A C G T A C G T C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T