Information for 12-GACAGACAGG (Motif 29)

A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G A C G T A G T C A C G T A C T G A C G T A G T C
p-value:1e-3
log p-value:-7.367e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets12.0 +/- 0.0bp
Average Position of motif in Background54.9 +/- 9.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----GACAGACAGG
AGGTGNCAGACAG-
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GACAGACAGG
AGGTGHCAGACA--
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGG-
-CCAGACRSVB
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGG
-CCAGACAG-
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GACAGACAGG-
TGAGTGACAGSC
 A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GACAGACAGG
NTGATTGACAGN
 A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GACAGACAGG
BTGABTGACAGS
 A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GACAGACAGG---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGG
-BCAGACWA-
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GACAGACAGG
----CACAGN
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C