Information for 2-TGACCYGAAKAGT (Motif 2)

A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T G T C A A C G T A G C T G T A C C T G A A C T G A C T G A C G T A T G C C T G A
p-value:1e-12
log p-value:-2.945e+01
Information Content per bp:1.817
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 33.8bp
Average Position of motif in Background38.4 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TGACCYGAAKAGT
NNNNTGACCCGGCGCG-
 A C G T A C G T A C G T A C G T A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGACCYGAAKAGT
TGACCTTGAT---
 A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGACCYGAAKAGT
TGACCT-------
 A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGACCYGAAKAGT
TGACCTYA-----
 A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGACCYGAAKAGT
NTGACCTTGA----
 A C G T A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGACCYGAAKAGT
NATGACCTTGA----
 A C G T A C G T A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGACCYGAAKAGT
ATGACCTTGA----
 A C G T A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGACCYGAAKAGT
NNCNTGACCCCGCTCT-
 A C G T A C G T A C G T A C G T A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGACCYGAAKAGT
TGACCYCT-----
 A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGACCYGAAKAGT
ATGACCTTGAA---
 A C G T A G C T A T C G C G T A A G T C A G T C A G C T A C T G C T G A G T C A C A G T C G T A A C T G A C G T
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T A C G T