Information for 4-CTAGCCAATA (Motif 17)

T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A
Reverse Opposite:
A C G T T G C A A G C T C A G T A C T G C T A G A G T C A G C T C T G A A C T G
p-value:1e-7
log p-value:-1.801e+01
Information Content per bp:1.661
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.31%
Number of Background Sequences with motif613.3
Percentage of Background Sequences with motif1.97%
Average Position of motif in Targets50.0 +/- 27.4bp
Average Position of motif in Background51.7 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTAGCCAATA-
ACTAGCCAATCA
 A C G T T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CTAGCCAATA--
--AGCCAATCGG
 T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTAGCCAATA
--TGCCAA--
 T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAGCCAATA
CGTGCCAAG-
 T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTAGCCAATA
BCAGACWA--
 T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTAGCCAATA--
AAATGGACCAATCAG
 A C G T A C G T A C G T T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAGCCAATA
GGTGCCAAGT
 T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTAGCCAATA
CGTCTAGACA---
 A C G T A C G T A C G T T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTAGCCAATA--
---GACAATGNN
 T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTAGCCAATA----
----CCAATAAAAC
 T G A C G A C T T C G A T C A G G A T C G T A C G T C A T C G A A C G T T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C