Information for 2-TGGATRBRCATGCATA (Motif 11)

A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A
Reverse Opposite:
A G C T G C T A A G C T A T C G G T A C C G T A A G C T C T A G A G C T T G A C A G C T G T C A G C A T T A G C A G T C G T C A
p-value:1e-10
log p-value:-2.456e+01
Information Content per bp:1.661
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.6 +/- 22.8bp
Average Position of motif in Background61.8 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGGATRBRCATGCATA
-AYATGYATATGCATR
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A
A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:TGGATRBRCATGCATA----
-------ATATGCAAATNNN
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGGATRBRCATGCATA-
--CTTTGTTATGCAAAT
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TGGATRBRCATGCATA-----
----AAAATATGCATAATAAA
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.60
Offset:9
Orientation:forward strand
Alignment:TGGATRBRCATGCATA---
---------ATGMATATDC
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TGGATRBRCATGCATA-
-------ATATGCAAAT
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGATRBRCATGCATA
ATGAATATTCATGAG--
 A C G T A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:TGGATRBRCATGCATA-
-------TTATGCAAAT
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGGATRBRCATGCATA-
--CATTGTTATGCAAAT
 A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGGATRBRCATGCATA
AACATGCCCAGACATGCCCN
 A C G T A C G T A C G T A C G T A C G T C T A G A T C G C G T A A C G T T C G A A C T G T C G A A G T C C T G A C G A T A C T G T A G C C T G A C A G T C T G A
C T A G C T G A A G T C G C T A C G A T A C T G G A C T G A T C G A T C C T G A C T A G C T G A T G A C G C T A C G A T T C A G G A C T G A T C G A T C C A G T