Information for 5-CWGATTTGTGWCT (Motif 5)

A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G C G A T A G T C C G T A A G T C C G T A C G T A C G T A A C G T A T G C C G A T A C T G
p-value:1e-13
log p-value:-3.077e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.2 +/- 28.0bp
Average Position of motif in Background62.9 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CWGATTTGTGWCT
-TGATTTATGGCC
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CWGATTTGTGWCT
-TGATTTATGGC-
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CWGATTTGTGWCT
NTGATTTATGGCC
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CWGATTTGTGWCT
-TGATTTATGGCC
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CWGATTTGTGWCT
CNGTGATTTN-----
 A C G T A C G T A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CWGATTTGTGWCT
--AATTAGTG---
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CWGATTTGTGWCT--
CTGATTGGTCNATTT
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CWGATTTGTGWCT---
NNGTTTTACGACTTTA
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CWGATTTGTGWCT---
ANNTTTTACGACNTNN
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CWGATTTGTGWCT
-DGWTTTATGRCN
 A G T C C G T A A T C G C G T A A C G T A C G T A C G T C T A G A C G T A C T G C G T A A G T C A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C