Information for 1-RAGATGGCGGCCA (Motif 5)

C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A
Reverse Opposite:
G A C T T A C G A T C G A G T C T A G C A C T G A G T C A G T C T G C A A C G T A G T C A C G T A G C T
p-value:1e-16
log p-value:-3.794e+01
Information Content per bp:1.763
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif142.4
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets53.3 +/- 25.1bp
Average Position of motif in Background52.9 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-RAGATGGCGGCCA
CAAGATGGCGGC--
 A C G T C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-RAGATGGCGGCCA
CAAGATGGCGGC--
 A C G T C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:RAGATGGCGGCCA
-TAATGGCGGNC-
 C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RAGATGGCGGCCA---
NAGANTGGCGGGGNGNA
 A C G T C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RAGATGGCGGCCA----
AAAAATGGCGCCATTTTT
 A C G T C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:RAGATGGCGGCCA
-----GGCGCGCT
 C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:RAGATGGCGGCCA-
--BTKGGCGGGAAA
 C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A A C G T
A C G T A C G T A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RAGATGGCGGCCA
---CWGGCGGGAA
 C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A
A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

E2F2/MA0864.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:RAGATGGCGGCCA---
AAAATGGCGCCATTTT
 C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A A C G T A C G T A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RAGATGGCGGCCA--
-----GGCGGGAAAH
 C T G A C G T A T C A G G T C A A C G T C T A G A C T G A G T C A C T G A C T G A T G C A T G C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T