Information for 2-AGCCAATGRT (Motif 2)

T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
Reverse Opposite:
T G C A A G C T A T G C C G T A A C G T A C G T A C T G A C T G A G T C A C G T
p-value:1e-19
log p-value:-4.397e+01
Information Content per bp:1.846
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.42%
Number of Background Sequences with motif186.1
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets53.7 +/- 22.9bp
Average Position of motif in Background48.0 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATGRT
ACTAGCCAATCA-
 A C G T A C G T A C G T T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:AGCCAATGRT
AGCCAATCGG
 T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AGCCAATGRT
TGCCAA----
 T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATGRT
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATGRT
CGTGCCAAG---
 A C G T A C G T T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGCCAATGRT
-GACAATGNN
 T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATGRT
GGTGCCAAGT--
 A C G T A C G T T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATGRT------
TGGACCAATCAGCACTCT
 A C G T A C G T T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGCCAATGRT
--CCAATCAA
 T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATGRT--
CTCACACAATGGCGC
 A C G T A C G T A C G T T G C A A C T G A G T C A G T C C G T A G T C A A C G T T A C G C T G A A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C