Information for 3-GAGGAGRGGAGAGCTG (Motif 6)

A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G
Reverse Opposite:
A G T C C G T A A T C G A G T C A C G T A T G C A C G T A T G C A T G C A G C T A G T C A C G T A T G C A T G C A C G T T A G C
p-value:1e-10
log p-value:-2.346e+01
Information Content per bp:1.774
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.66%
Number of Background Sequences with motif63.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets53.8 +/- 19.6bp
Average Position of motif in Background48.2 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myod1/MA0499.1/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAGGAGRGGAGAGCTG--
-----NGNGACAGCTGCN
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGGAGRGGAGAGCTG
--GGAGGGGGAA----
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G
A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T A C G T A C G T

ZNF263/MA0528.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGGAGRGGAGAGCTG----
GGAGGAGGAGGGGGAGGAGGA
 A C G T A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T A C G T A C G T
C T A G C T A G C T G A C A T G T A C G G C T A C A T G T C A G T C G A T C A G C T A G C T A G C T A G T C A G C T G A C T A G C T A G C T G A C T A G C T A G C T G A

Myog/MA0500.1/Jaspar

Match Rank:4
Score:0.54
Offset:8
Orientation:forward strand
Alignment:GAGGAGRGGAGAGCTG---
--------GACAGCTGCAG
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

Tcf12/MA0521.1/Jaspar

Match Rank:5
Score:0.54
Offset:8
Orientation:forward strand
Alignment:GAGGAGRGGAGAGCTG---
--------AACAGCTGCAG
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GAGGAGRGGAGAGCTG--
------NNVVCAGCTGBN
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.52
Offset:8
Orientation:forward strand
Alignment:GAGGAGRGGAGAGCTG
--------AACAGCTG
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:GAGGAGRGGAGAGCTG---
---------HCAGCTGDTN
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GAGGAGRGGAGAGCTG--
------NNAGCAGCTGCT
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:9
Orientation:forward strand
Alignment:GAGGAGRGGAGAGCTG---
---------NCAGCTGCTG
 A C T G G T C A A T C G A T C G C G T A A C T G C T G A A T C G A T C G T G C A A T C G C G T A C T A G A T G C C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G