Information for 1-AGCAGCTGGCCACCTD (Motif 2)

G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G
Reverse Opposite:
G A T C C G T A A C T G T A C G A C G T A C T G A C T G A G T C A G T C G T C A A C T G A G T C C G A T A C T G A T G C C A G T
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.806
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.4 +/- 26.6bp
Average Position of motif in Background53.0 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGCAGCTGGCCACCTD
AACAGATGGC------
 G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGCAGCTGGCCACCTD-
NVCAKCTGGNNNCCAGMTGB
 A C G T A C G T A C G T G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G A C G T
T A C G T G A C T G A C C G T A A C T G T A G C C G A T A C T G A T C G A G C T A T G C T C G A T A G C G T A C C G T A A C T G T G A C G C A T A C T G A C T G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGCAGCTGGCCACCTD
VNAVCAGCTGGC------
 A C G T A C G T G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.57
Offset:8
Orientation:forward strand
Alignment:AGCAGCTGGCCACCTD--
--------NNCACCTGNN
 G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AGCAGCTGGCCACCTD-
-------NNVCAGCTGB
 G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCAGCTGGCCACCTD
NAACAGCTGG-------
 A C G T G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AGCAGCTGGCCACCTD---
-------SNGCACCTGCHS
 G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

FIGLA/MA0820.1/Jaspar

Match Rank:8
Score:0.56
Offset:8
Orientation:forward strand
Alignment:AGCAGCTGGCCACCTD--
--------ACCACCTGTT
 G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCTGGCCACCTD
CAGCAGCTGN-------
 A C G T G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGCAGCTGGCCACCTD
NNVVCAGCTGBN------
 A C G T A C G T G T C A A T C G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C A G T C G T C A A T G C A G T C C G A T C A T G
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T