Information for 9-RGRARAATATMMWMMA (Motif 9)

C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A
Reverse Opposite:
A C G T A C T G A C T G C G T A A C G T A C T G C G T A A C G T C G T A A G C T A C G T A G C T A C G T A G C T A G T C A G T C
p-value:1e-9
log p-value:-2.200e+01
Information Content per bp:1.811
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.3 +/- 20.4bp
Average Position of motif in Background54.3 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0063.1_Sox13_1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---RGRARAATATMMWMMA
TTAAGAACAATAAATT---
 A C G T A C G T A C G T C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---RGRARAATATMMWMMA
TTTAGAACAATAAAAT---
 A C G T A C G T A C G T C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RGRARAATATMMWMMA
--AAGGATATNTN---
 C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RGRARAATATMMWMMA----
---TAAATGTAAACAAAGGT
 C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G T A C G T A C G T A G C A T C T A G C G A T G T C A C G T A C T G A A G T C C G T A G C T A C G T A T A C G T C A G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----RGRARAATATMMWMMA
NNNNNGAACAATTGANN---
 A C G T A C G T A C G T A C G T C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---RGRARAATATMMWMMA
TNNAGAACAATANATNN--
 A C G T A C G T A C G T C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---RGRARAATATMMWMMA-
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A C G T C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Foxk1/MA0852.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RGRARAATATMMWMMA----
---AAAATGTAAACAAACAG
 C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RGRARAATATMMWMMA----
---AAAATGTAAACAAACAG
 C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---RGRARAATATMMWMMA
TAGTGAACAATAGATTT--
 A C G T A C G T A C G T C T A G A C T G C T G A C G T A C T G A C G T A C T G A A C G T C G T A A C G T G T A C G T C A C G A T G T A C G T A C C G T A
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T A C G T