Information for 7-RAAYMTARTMCRGMWK (Motif 7)

C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G
Reverse Opposite:
G T A C C G T A A C G T A G T C A G T C C T A G A C G T C G T A A G T C A C G T C G T A A C G T C T A G A C G T A C G T A G C T
p-value:1e-10
log p-value:-2.408e+01
Information Content per bp:1.784
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.0 +/- 19.0bp
Average Position of motif in Background66.6 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:RAAYMTARTMCRGMWK-
---NNTAATCCNGNCNN
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G A C G T
A C G T A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RAAYMTARTMCRGMWK
TAAGATTATAATACGG---
 A C G T A C G T A C G T C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RAAYMTARTMCRGMWK-
YTAATTRAWWCCAGATGT
 A C G T C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RAAYMTARTMCRGMWK-
NNNATTAATCCGNTTNA
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RAAYMTARTMCRGMWK-
NNNATTAATCCGNTTNA
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

OTX1/MA0711.1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RAAYMTARTMCRGMWK
----TTAATCCG----
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:RAAYMTARTMCRGMWK
----TTAATCCT----
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RAAYMTARTMCRGMWK
---GCTAATCC-----
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:RAAYMTARTMCRGMWK
----TTAATCCC----
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:RAAYMTARTMCRGMWK
----YTAATCCY----
 C T G A C G T A C G T A A G T C G T C A A C G T C G T A C T A G A C G T T G A C A G T C C T A G A C T G G T C A C G A T A C T G
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T