Information for 19-ATTTATTCCG (Motif 48)

C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A A C G T
p-value:1e-2
log p-value:-6.701e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.0 +/- 0.0bp
Average Position of motif in Background59.6 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATTTATTCCG
NTTTTATGAC-
 A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATTTATTCCG
TTTTATTGC-
 C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATTCCG----
NANANTTAATCCCNNNN
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATTCCG
NTGATTTATGGCC
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ATTTATTCCG
NTTTTATTACN
 A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0125.1_Obox5_2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATTTATTCCG----
GATAATTAATCCCTCTT
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATTCCG---
NAATTTTATTACCNNN
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATTTATTCCG--
TNAATTTTATTACCTN
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATTTATTCCG
TTTTTATTGC-
 A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATTCCG
DGWTTTATGRCN
 A C G T A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C T G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C