Information for 18-TKAATATGKACWWAAT (Motif 28)

A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T
Reverse Opposite:
C T G A A C G T G A C T C G T A C G T A C T A G C G A T G T C A G T A C T C G A A C G T C T G A C A G T A G C T G T C A C G T A
p-value:1e-5
log p-value:-1.187e+01
Information Content per bp:1.663
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif59.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets66.7 +/- 13.3bp
Average Position of motif in Background50.0 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-2/MA0675.1/Jaspar

Match Rank:1
Score:0.50
Offset:11
Orientation:reverse strand
Alignment:TKAATATGKACWWAAT---
-----------TTAATTAN
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TKAATATGKACWWAAT---
---GGAGGTCATTAATTAT
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Hoxd8/MA0910.1/Jaspar

Match Rank:3
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TKAATATGKACWWAAT-----
----TAAATAATTAATGGCTA
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

PH0080.1_Hoxd8/Jaspar

Match Rank:4
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TKAATATGKACWWAAT-----
----TAAATAATTAATGGCTA
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TKAATATGKACWWAAT
ATGAATATTC-------
 A C G T A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TKAATATGKACWWAAT---
--ANNATTTAATTAATTNN
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PH0019.1_Dbx2/Jaspar

Match Rank:7
Score:0.49
Offset:6
Orientation:forward strand
Alignment:TKAATATGKACWWAAT------
------TTTAATTAATTAATTC
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T C A C G T A G C A T G A C T C G T A C G T A C G A T C A G T C T G A C G T A A C G T G C A T G T A C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TKAATATGKACWWAAT
ATGMATATDC-------
 A C G T A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.49
Offset:10
Orientation:reverse strand
Alignment:TKAATATGKACWWAAT
----------TTTAAT
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.48
Offset:11
Orientation:reverse strand
Alignment:TKAATATGKACWWAAT---
-----------TTAATTAN
 A C G T A C G T C T G A G T C A A G C T G T C A A G C T C A T G A C G T G C T A G A T C C G A T C G A T C T G A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C