Information for 17-YMWKYCWGRAGGR (Motif 27)

A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G
Reverse Opposite:
A G T C A G T C A G T C A C G T A G C T A G T C C G A T A C T G C T G A G T C A C G T A A C G T C T A G
p-value:1e-5
log p-value:-1.187e+01
Information Content per bp:1.778
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif59.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets34.0 +/- 19.1bp
Average Position of motif in Background49.0 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:YMWKYCWGRAGGR--
---CACAGCAGGGGG
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YMWKYCWGRAGGR----
--DCHCAGCAGGRGGCC
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:YMWKYCWGRAGGR--
CCACACAGCAGGAGA
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:YMWKYCWGRAGGR
------NGAAGC-
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:YMWKYCWGRAGGR
--DCTCAGCAGG-
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:YMWKYCWGRAGGR--
CCACACAGCAGGAGA
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:YMWKYCWGRAGGR---
------GGGAGGACNG
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:YMWKYCWGRAGGR-
--TGCCCNGGGGCA
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G A C G T
A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:YMWKYCWGRAGGR---
-TTTCCTGGAAAGNNN
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G A C G T A C G T A C G T
A C G T G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:YMWKYCWGRAGGR
-ATGCCAGACN--
 A G T C G T C A C G A T A C G T A G C T A G T C C G T A A C T G C T G A C G T A A C T G A C T G C T A G
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T