Information for 2-AGGGGTCADAGGACAA (Motif 2)

C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
Reverse Opposite:
C G A T C G A T A T C G A G C T A G T C A G T C C G A T G A C T A C G T C T A G C G T A A T G C A G T C A G T C A G T C C G A T
p-value:1e-11
log p-value:-2.742e+01
Information Content per bp:1.738
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif13.79%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 33.7bp
Average Position of motif in Background58.8 +/- 38.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AGGGGTCADAGGACAA
GGCGAGGGGTCAAGGGC---
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGGGGTCADAGGACAA
-GGGGTCAAAGGTCA-
 C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGGGTCADAGGACAA
AGGGGTCAGAGGTCA-
 C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGGGGTCADAGGACAA
-GGGGTCAAAGGTCA-
 C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

RXRG/MA0856.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGGGGTCADAGGACAA
-GGGGTCAAAGGTCA-
 C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AGGGGTCADAGGACAA
NTNNNGGGGTCANGNNN---
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AGGGGTCADAGGACAA
CTCCAGGGGTCAATTGA---
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGGGGTCADAGGACAA
-GAGGTCAAAGGTCA-
 C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGGGTCADAGGACAA
AGRGGTCA--------
 C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGGGGTCADAGGACAA
-GAGGTCAAAGGTCA-
 C G T A C T A G A C T G A C T G A T C G A C G T A G T C C G T A C G T A C G T A C T A G C T A G C T G A A T G C C G T A G C T A
A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T