Information for 10-GVTTTTAATHTACAAA (Motif 12)

C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T C G A T C T A G A G C T G T C A C A G T C G T A G C A T C A G T C T G A C G T A C G T A C T G A A C T G A G T C
p-value:1e-8
log p-value:-1.871e+01
Information Content per bp:1.746
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.3 +/- 25.2bp
Average Position of motif in Background32.2 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GVTTTTAATHTACAAA-
--CTTTGTTATGCAAAT
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GVTTTTAATHTACAAA-
--CATTGTTATGCAAAT
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GVTTTTAATHTACAAA----
---TNNATTATGCATANNTT
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GVTTTTAATHTACAAA
---TTTAAT-------
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A
A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GVTTTTAATHTACAAA-
-------ATATGCAAAT
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GVTTTTAATHTACAAA--
------AATATGCAAATT
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GVTTTTAATHTACAAA-
-------TTATGCAAAT
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

PB0080.1_Tbp_1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GVTTTTAATHTACAAA----
----TCTTTATATATAAATA
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GVTTTTAATHTACAAA---
---TNTAATTTGCATANNN
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GVTTTTAATHTACAAA----
-------ATATGCAAATNNN
 C T A G T A G C A G C T A C G T A C G T A G C T G T C A C G T A A C G T G C T A A C G T C T G A A G T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A