Information for 5-YCTCGTAAMA (Motif 8)

A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A
Reverse Opposite:
C G A T A C G T C A G T C A G T T G C A G A T C C T A G C T G A A T C G T C A G
p-value:1e-12
log p-value:-2.934e+01
Information Content per bp:1.647
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.18%
Number of Background Sequences with motif431.6
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets47.1 +/- 29.5bp
Average Position of motif in Background48.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:YCTCGTAAMA-
GCTCGTAAAAA
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---YCTCGTAAMA---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---YCTCGTAAMA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:YCTCGTAAMA
CCYMATAAAA
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:YCTCGTAAMA-
-GTCGTAAAAA
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YCTCGTAAMA-
-GTCGTAAAAT
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:YCTCGTAAMA
NCYAATAAAA
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:YCTCGTAAMA-
AGTCGTAAAAA
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:YCTCGTAAMA--
GGTCGTAAAATT
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:YCTCGTAAMA-
-CCAATAAAAA
 A G T C T A G C G A C T G A T C C T A G A C G T G T C A G T C A T G C A G C T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A