Information for 4-ATGGTAACCATGG (Motif 4)

C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G
Reverse Opposite:
G T A C A G T C C G T A A C G T A T C G A C T G A C G T C G A T C G T A T A G C A G T C C G T A A G C T
p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.929
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.4 +/- 17.3bp
Average Position of motif in Background53.7 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATGGTAACCATGG--
NNNGTAACTANGNNA
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PB0158.1_Rfx3_2/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ATGGTAACCATGG------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

RFX4/MA0799.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATGGTAACCATGG-----
--CGTTGCCATGGCAACN
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ATGGTAACCATGG---
--NGTTGCCATGGCAA
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ATGGTAACCATGG---
--GGTTGCCATGGCAA
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATGGTAACCATGG-----
--CGTTGCCATGGCAACN
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ATGGTAACCATGG-----
--CGTTGCCATGGCAACG
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATGGTAACCATGG----
--KGTTGCCATGGCAAC
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATGGTAACCATGG
NNNNCTGTTAACNNTNN
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:ATGGTAACCATGG----
---GTTGCCATGGNAAC
 C T G A A C G T A C T G A C T G A C G T G C T A C G T A A G T C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C