Information for 3-GGCAAAGTTC (Motif 3)

C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C
Reverse Opposite:
C T A G G C T A G T C A A G T C A G C T G A C T C A G T T C A G A G T C G T A C
p-value:1e-11
log p-value:-2.757e+01
Information Content per bp:1.682
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.46%
Number of Background Sequences with motif1046.0
Percentage of Background Sequences with motif2.15%
Average Position of motif in Targets46.7 +/- 27.1bp
Average Position of motif in Background51.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GGCAAAGTTC-
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GGCAAAGTTC-
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GGCAAAGTTC-
TAGGGCAAAGGTCA
 A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GGCAAAGTTC-
TGGGGCAAAGGTCA
 A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GGCAAAGTTC-
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGCAAAGTTC--
--CAAAGGTCAG
 C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T A C G T
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGCAAAGTTC---
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGCAAAGTTC-
GAGGTCAAAGGTCA
 A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAAGTTC-
ANGNAAAGGTCA
 A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

RXRG/MA0856.1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGCAAAGTTC-
GGGGTCAAAGGTCA
 A C G T A C G T A C G T C A T G T C A G A G T C G T C A C T G A T C G A A C T G C A G T C G A T G A T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A