Information for 10-GAGGGCACACAAA (Motif 16)

A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A
Reverse Opposite:
C G A T A C G T A C G T C T A G A C G T A T C G A C G T A C T G A T G C A G T C A G T C A C G T A T G C
p-value:1e-7
log p-value:-1.806e+01
Information Content per bp:1.825
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets71.3 +/- 16.4bp
Average Position of motif in Background32.0 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GAGGGCACACAAA---
CGAAGCACACAAAATA
 A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGGGCACACAAA---
AGCGGCACACACGCAA
 A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAGGGCACACAAA
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGGGCACACAAA-
TACATGTGCACATAAAA
 A C G T A C G T A C G T A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGGGCACACAAA
-RGGGCACTAACY
 A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A
A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GAGGGCACACAAA
NNNNTTGGGCACNNCN-
 A C G T A C G T A C G T A C G T A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCACACAAA
NGTGGGCAT-----
 A C G T A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCACACAAA
TRAGGTCA------
 A C G T A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGGGCACACAAA
AAGGTCAC-----
 A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGGGCACACAAA-----
---CTCACACAATGGCGC
 A T C G C G T A C T A G A C T G A T C G G T A C G T C A T A G C C G T A A G T C C G T A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C