Information for 6-GACACTGACCTBACTA (Motif 6)

A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
Reverse Opposite:
C G A T G T C A A C T G A C G T T C G A C G T A A C T G T A C G A C G T A T G C C G T A C T A G A C G T A C T G C G A T G T A C
p-value:1e-9
log p-value:-2.200e+01
Information Content per bp:1.748
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.2 +/- 30.5bp
Average Position of motif in Background48.0 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GACACTGACCTBACTA
TGACCTTGACCT-----
 A C G T A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GACACTGACCTBACTA
TGACCTTGACCT-----
 A C G T A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:GACACTGACCTBACTA
-----TGACCTYA---
 A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GACACTGACCTBACTA
AGGTCANTGACCTN----
 A C G T A C G T A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GACACTGACCTBACTA
-----TGACCTTGAT-
 A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GACACTGACCTBACTA
-NNACTTACCTN----
 A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GACACTGACCTBACTA
-----TGACCT-----
 A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GACACTGACCTBACTA
----GTGACCTT----
 A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GACACTGACCTBACTA
-----TGACCYCT---
 A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GACACTGACCTBACTA--
----TTGACCTANTTATN
 A C T G C G T A G T A C G T C A A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C G T G T C A G T A C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A