Information for 21-GCAGCAGCAGAAG (Motif 41)

A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.789e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.0 +/- 0.0bp
Average Position of motif in Background61.9 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGCAGCAGAAG
NNNNAGCAGCTGCTGAN-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCAGCAGCAGAAG
--ANCAGCTG---
 A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCAGCAGCAGAAG
NCAGCTGCTG---
 A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGCAGAAG
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGCAGAAG
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGCAGAAG
AGCAGCTGCTNN--
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGCAGAAG
CGCAGCTGCG----
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCAGCAGCAGAAG
ADGGYAGYAGCATCT-
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGCAGAAG
GACAGCTGCAG---
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGCAGAAG
ATTTACAGTAGCAAAA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C T G
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T