Information for 6-GTCTAACAAC (Motif 32)

A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A C G T A C G T C G T A A C T G C G T A A G T C
p-value:1e-3
log p-value:-7.789e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 0.0bp
Average Position of motif in Background5.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTCTAACAAC-
TGTCTGDCACCT
 A C G T A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCTAACAAC-
CTGTCTGTCACCT
 A C G T A C G T A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTCTAACAAC-----
NNNTAACAATTATAN
 A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GTCTAACAAC
---NAACAAT
 A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCTAACAAC---
AAAAATAACAAACGG
 A C G T A C G T A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCTAACAAC-----
ATGTCACAACAACAC
 A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTCTAACAAC--
--RNAACAATGG
 A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GTCTAACAAC
----AACAAT
 A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C
A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCTAACAAC---
CCGCATAGCAACGGA
 A C G T A C G T A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0123.1_Foxl1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTCTAACAAC---
ATATCAAAACAAAACA
 A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A