Information for 2-CAKKATTGKSRATATG (Motif 2)

A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
Reverse Opposite:
G T A C C G T A C G A T G T C A C A G T A G C T T A G C G T C A A G T C G T C A C G T A C G A T G T A C G T C A G C A T T C A G
p-value:1e-10
log p-value:-2.407e+01
Information Content per bp:1.688
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif14.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets31.2 +/- 14.2bp
Average Position of motif in Background41.7 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAKKATTGKSRATATG
-CTCATTGTC------
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAKKATTGKSRATATG
-TTGATTGN-------
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CAKKATTGKSRATATG
---NNTTGGCANN---
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CAKKATTGKSRATATG---
-----TTGGCATGGTGCCA
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAKKATTGKSRATATG
----ATTGTT------
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CAKKATTGKSRATATG
-----TTGGCA-----
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CAKKATTGKSRATATG
----ATTGTTTAN---
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CAKKATTGKSRATATG
----NTTGGCANN---
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CAKKATTGKSRATATG
CTATAATTGTTAGCG--
 A C G T A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CAKKATTGKSRATATG
--CCATTGTTNY----
 A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C T G C A G T A T C G T C G A G T C A C A G T G C T A C G A T A C T G
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T A C G T