Information for 1-RACTKGWMRAARTTYA (Motif 1)

C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
Reverse Opposite:
A C G T C T G A C G T A C G T A A G T C C G A T A C G T A G C T A C G T C G A T A G T C G T A C C G T A A C T G A C G T A G T C
p-value:1e-10
log p-value:-2.530e+01
Information Content per bp:1.827
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.3 +/- 5.2bp
Average Position of motif in Background19.1 +/- 0.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RACTKGWMRAARTTYA
TACTGGAAAAAAAA--
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--RACTKGWMRAARTTYA
AAACCTCGTAAAATTT--
 A C G T A C G T C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RACTKGWMRAARTTYA
CAATTGCAAAAATAT-
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:RACTKGWMRAARTTYA----
----NNNNTGAATTCANNNC
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:RACTKGWMRAARTTYA
-GCTCGTAAAAA----
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:RACTKGWMRAARTTYA--
-AAAGGTCAAAGGTCAAC
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A A C G T A C G T
A C G T G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:RACTKGWMRAARTTYA--
--GGGGTCAAAGTCCAAT
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:RACTKGWMRAARTTYA
--GGGGTCAAAGGTCA
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:RACTKGWMRAARTTYA
--GGGGTCAAAGGTCA
 C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--RACTKGWMRAARTTYA
AAAGCTCGTAAAATTT--
 A C G T A C G T C T A G C G T A A G T C A C G T A C T G A C T G C G T A G T C A T C A G C G T A C G T A C T A G A C G T A C G T A G C T C G T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T