Information for 2-TGATGGCTCT (Motif 9)

A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G G T C A A C T G A G T C A G T C C G T A A C G T A G T C G T C A
p-value:1e-5
log p-value:-1.265e+01
Information Content per bp:1.945
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif6.38%
Number of Background Sequences with motif27.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets51.2 +/- 27.2bp
Average Position of motif in Background56.7 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGATGGCTCT
GTTAATGGCC--
 A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGATGGCTCT-
TAATGGCGGNC
 A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A C G T
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TGATGGCTCT
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGCTCT
TTGATTGN---
 A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TGATGGCTCT
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------TGATGGCTCT--
GNCTGTASTRNTGBCTCHTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A C G T A C G T
C T A G G A C T G A T C A C G T A T C G A G C T C T G A A T C G C G A T C T A G G A T C G A C T C A T G A T C G G T A C G A C T A G T C G C A T A G C T C G A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGCTCT-
ATGATKGATGRC
 A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGATGGCTCT
-NTTGGCANN
 A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGATGGCTCT
AACAGATGGC---
 A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGATGGCTCT
----NGCTN-
 A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T