Information for 2-CCTGACCAGAGGA (Motif 4)

A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
Reverse Opposite:
A C G T G T A C A T G C A C G T A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G A C T G
p-value:1e-6
log p-value:-1.449e+01
Information Content per bp:1.946
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.26%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.2 +/- 25.1bp
Average Position of motif in Background59.6 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTGACCAGAGGA--
-NTGCCCANNGGTNA
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A A C G T A C G T
A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACCAGAGGA-
NNNNTGACCCGGCGCG
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCTGACCAGAGGA
--TGACCT-----
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCTGACCAGAGGA
--TGACCTYA---
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACCAGAGGA-
NNCNTGACCCCGCTCT
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCTGACCAGAGGA
-NAAACCACAG--
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGACCAGAGGA
--TGCCCAGNHW-
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTGACCAGAGGA
CCTCACCTG----
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCTGACCAGAGGA
--AAACCACAGC-
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTGACCAGAGGA
-ATGCCCTGAGGC
 A G T C A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A T C G A C T G C G T A
A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C