Information for 1-GCTTAAGAKTACM (Motif 1)

T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
Reverse Opposite:
A C G T A T C G C A G T C G T A G T C A C G A T G T A C G A C T C A G T C G T A G T C A T C A G A G T C
p-value:1e-8
log p-value:-1.969e+01
Information Content per bp:1.702
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif12.77%
Number of Background Sequences with motif118.1
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets49.2 +/- 25.9bp
Average Position of motif in Background46.2 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTTAAGAKTACM
GKMTCADRTTWC-
 T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTTAAGAKTACM
GKVTCADRTTWC-
 T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCTTAAGAKTACM--
GGGGTCAAAGTCCAAT
 A C G T T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCTTAAGAKTACM
-----AGATAASR
 T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCTTAAGAKTACM----
-GGCAAAAGTCCAATAA
 T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Nkx2-5/MA0063.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCTTAAGAKTACM
--TTAATTG----
 T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCTTAAGAKTACM
CGGTTTCAAA-----
 A C G T A C G T T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCTTAAGAKTACM
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

GATA5/MA0766.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GCTTAAGAKTACM
-----AGATAAGA
 T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A

Arid5a/MA0602.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GCTTAAGAKTACM---
--CTAATATTGCTAAA
 T C A G A G T C A C G T A C G T G C T A C T G A A C T G C G T A A C G T C G A T G T C A A T G C G T C A A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A