Information for 4-AGAGGAAAAACCCAGT (Motif 6)

C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
Reverse Opposite:
T C G A A G T C A C G T A C T G A C T G A C T G A C G T A C G T A C G T A G C T A G C T A G T C A G T C A C G T A T G C A G C T
p-value:1e-10
log p-value:-2.388e+01
Information Content per bp:1.877
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.4 +/- 26.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGAGGAAAAACCCAGT
---GGAAATCCCC---
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AGAGGAAAAACCCAGT
----GGAAANCCCC--
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGAGGAAAAACCCAGT
---GGGAAATCCCCN-
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGAGGAAAAACCCAGT
---GGAAATTCCC---
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGAGGAAAAACCCAGT
---GGAAATTCCC---
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGAGGAAAAACCCAGT
-GGGGGAATCCCC---
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AGAGGAAAAACCCAGT-
------AAATCACAGCA
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGAGGAAAAACCCAGT
CAAAAGTAAACAAAG-
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGAGGAAAAACCCAGT
--AGGGGAATCCCCT-
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T
A C G T A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:AGAGGAAAAACCCAGT--
--------TGCCCAGNHW
 C T G A A T C G C G T A C T A G A C T G C T G A C T G A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A