Information for 2-RGTMARWRYTWAC (Motif 5)

C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
Reverse Opposite:
A C T G A C G T G C A T C G T A C T A G A G C T C G T A A G C T A C G T A C G T C G T A A G T C A G C T
p-value:1e-5
log p-value:-1.356e+01
Information Content per bp:1.799
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif196.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets66.0 +/- 14.0bp
Average Position of motif in Background50.5 +/- 84.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF1A/MA0046.2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RGTMARWRYTWAC-
AGTTAATGATTAACT
 A C G T C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C A C G T
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T

HNF1B/MA0153.2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RGTMARWRYTWAC
GTTAATNATTAAC
 C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
C T A G A G C T G A C T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G T A C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RGTMARWRYTWAC
GAGGTCAAAGGTCA-
 A C G T A C G T C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RGTMARWRYTWAC
GGGGTCAAAGGTCA-
 A C G T A C G T C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RGTMARWRYTWAC
GGGGTCAAAGGTCA-
 A C G T A C G T C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RGTMARWRYTWAC
GAGGTCAAAGGTCA-
 A C G T A C G T C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RGTMARWRYTWAC
CAGGTAAGTAT----
 A C G T A C G T C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RGTMARWRYTWAC
GGGGTCAAAGGTCA-
 A C G T A C G T C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

FOXI1/MA0042.2/Jaspar

Match Rank:9
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:RGTMARWRYTWAC
------TGTTTAC
 C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C A T A C G T A C G T C G T A A G T C

FOXD1/MA0031.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:RGTMARWRYTWAC
-----ATGTTTAC
 C T G A A C T G A C G T G T C A C G T A C T G A C G A T C T G A A G T C A C G T C G A T C G T A A G T C
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C