Information for 15-ATGATCACCTATC (Motif 18)

C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T C G T A A C T G A C T G A C G T A C T G C G T A A C G T A G T C C G T A A C G T
p-value:1e-5
log p-value:-1.157e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets23.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six3/MA0631.1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCACCTATC
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0163.1_Six3/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCACCTATC
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0161.1_Six1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCACCTATC
ANNNATGATACCCCATC
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGATCACCTATC
ATTAACACCT---
 C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCACCTATC
ANANNTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

PH0166.1_Six6_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCACCTATC
AATNTTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCACCTATC
ANANNTGATACCCNATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

PH0017.1_Cux1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----ATGATCACCTATC
TAATGATGATCACTA---
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A A C G T A C G T A C G T

PH0016.1_Cux1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----ATGATCACCTATC
ACCGGTTGATCACCTGA-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A A C G T

PH0162.1_Six2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCACCTATC
ANANGTGATACCCCATT
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A C G T A G T C
G T C A C T G A C G T A G T A C C T A G A G C T C A T G C G T A A G C T G T C A A G T C T G A C A G T C A G T C G T C A C G A T G A C T