Information for 5-AGWCAMTGACCWS (Motif 5)

C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C
Reverse Opposite:
A T C G C G A T A C T G A C T G C A G T A G T C C G T A A C T G A C G T A C T G C G A T A G T C A C G T
p-value:1e-8
log p-value:-1.913e+01
Information Content per bp:1.868
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 23.2bp
Average Position of motif in Background62.4 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AGWCAMTGACCWS
AGGTCANTGACCTN
 A C G T C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:AGWCAMTGACCWS
------TGACCT-
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:AGWCAMTGACCWS-
------TGACCYCT
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:AGWCAMTGACCWS-
------TGACCTYA
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGWCAMTGACCWS
-GACAATGNN---
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AGWCAMTGACCWS---
------TGACCTTGAT
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGWCAMTGACCWS
TGACCTTGACCT-
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGWCAMTGACCWS-----
--NNNNTGACCCGGCGCG
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGWCAMTGACCWS-
TGACCCAGTGACCTAC
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGWCAMTGACCWS
TGACCTTGACCT-
 C G T A A C T G C G T A A G T C C G T A G T A C A C G T C T A G G T C A A G T C A G T C C G T A A T G C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T