Information for 1-GGRCKRAACCATT (Motif 1)

A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G A C T G A C G T C G A T A G C T T G C A A C T G A G C T A G T C A G T C
p-value:1e-19
log p-value:-4.422e+01
Information Content per bp:1.811
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif4.96%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.2 +/- 31.6bp
Average Position of motif in Background76.9 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:0.68
Offset:5
Orientation:forward strand
Alignment:GGRCKRAACCATT--
-----AAACMATTAN
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGRCKRAACCATT-----
---ATAAACAATTAAACA
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGRCKRAACCATT----
---AAAAACCATTAAGG
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGRCKRAACCATT--
-NNCNNAACAATTNT
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

VENTX/MA0724.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGRCKRAACCATT--
------ACCGATTAG
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGRCKRAACCATT-----
-TNCNNAACAATTTTTNC
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGRCKRAACCATT----
NNNNNGAACAATTGANN
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GGRCKRAACCATT-----
--------CCATTGTTYB
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GGRCKRAACCATT--
-------GCAATTAG
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:GGRCKRAACCATT---
--------YCATTAMC
 A C T G A C T G C T A G T G A C A C G T C T A G C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C