Information for 6-GGCCGGCAGGCAG (Motif 13)

C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A G T C A G T C C G A T A T C G A G T C A G T C A C T G C T A G A G T C A G T C
p-value:1e-3
log p-value:-7.421e+00
Information Content per bp:1.775
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif91.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets34.0 +/- 8.3bp
Average Position of motif in Background50.0 +/- 36.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGGCAGGCAG
TGGCAGNCTGCCAG
 A C G T C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCCGGCAGGCAG---
NGTAGGTTGGCATNNN
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCCGGCAGGCAG-----
GGAAGGAAGGAAGGAAGG
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGCCGGCAGGCAG--
-----ACAGGAAGTG
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGCCGGCAGGCAG--
-----ACAGGAAGTG
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCCGGCAGGCAG--
DCHCAGCAGGRGGCC
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGCCGGCAGGCAG
CCGCCCAAGGGCAG
 A C G T C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGCCGGCAGGCAG
-CACAGCAGGGGG
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGCCGGCAGGCAG
AGGTGNCAGACAG
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCAGGCAG
-----CCAGACAG
 C T A G A C T G A G T C G T A C C T A G A C T G A T G C C G T A A C T G C T A G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G