Information for 2-GCACGTTTCC (Motif 4)

A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
Reverse Opposite:
A C T G A C T G C G T A C T G A C G T A T A G C A C T G A C G T A C T G G T A C
p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.755
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif543.0
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets47.2 +/- 24.5bp
Average Position of motif in Background51.0 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCACGTTTCC
GCACGTACCC
 A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCACGTTTCC
GCACGTAY--
 A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

Hes2/MA0616.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCACGTTTCC---
GCACGTGTCNNNN
 A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C A C G T A C G T A C G T
A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTTTCC
BGCACGTA---
 A C G T A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCACGTTTCC
GCACGTNC--
 A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTTTCC
GGCACGTGNC-
 A C G T A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T

Npas2/MA0626.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACGTTTCC
GGCACGTGTC-
 A C G T A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCACGTTTCC
GCACGTGT--
 A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T

HEY1/MA0823.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTTTCC
GGCACGTGTC-
 A C G T A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
A C T G T C A G G A T C T C G A A T G C A C T G A G C T T C A G A G C T A T G C A C G T

Arnt/MA0004.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCACGTTTCC
-CACGTG---
 A C T G T G A C G T C A G T A C A T C G G C A T G A C T A C G T T G A C A G T C
A C G T A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T