Information for 7-AGGTTTTGGAGAG (Motif 13)

C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G
Reverse Opposite:
A G T C A C G T A T G C A C G T A G T C A G T C C G T A C G T A C G T A C T G A A G T C A G T C A C G T
p-value:1e-9
log p-value:-2.131e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 27.3bp
Average Position of motif in Background72.1 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F7/MA0758.1/Jaspar

Match Rank:1
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGGTTTTGGAGAG----
---TTTTGGCGGGAAAA
 C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T G C A T C G A T T A C G A C T G A G T C A C T G A T C G A T C G C T G A C T G A G C T A G C T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGGTTTTGGAGAG--
-----BTBRAGTGSN
 C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

E2F8/MA0865.1/Jaspar

Match Rank:3
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGGTTTTGGAGAG---
----TTTGGCGGGAAA
 C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTTTGGAGAG--
NAATTTTACGAGNTNN
 A C G T C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AGGTTTTGGAGAG--
ANATTTTACGAGNNNN
 A C G T C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----AGGTTTTGGAGAG
NNCTTTGTTTTGNTNNN
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----AGGTTTTGGAGAG
GCGGAGGTGTCGCCTC-
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AGGTTTTGGAGAG---
------TTGAGTGSTT
 C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0036.1_Irf6_1/Jaspar

Match Rank:9
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----AGGTTTTGGAGAG
NNNTTGGTTTCGNTNNN
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AGGTTTTGGAGAG
-NTTTTACGAGN-
 C G T A C T A G A C T G A G C T A C G T A C G T C G A T A C T G A C T G C G T A A T C G C G T A A C T G
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T