Information for 23-TCATTAATTCTTGTCA (Motif 42)

A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C C G T A C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C T G C G T A
p-value:1e-3
log p-value:-7.554e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets8.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0150.1_Pou4f3/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TCATTAATTCTTGTCA
GACNTCATTAATAANN----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T A C G T A C G T A C G T A C G T

PH0142.1_Pou1f1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCATTAATTCTTGTCA
GANTTAATTAATTANNN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C A C G T A C G T A C G T

PH0120.1_Nkx6-3/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TCATTAATTCTTGTCA
CNNANTAATTAATTNNC----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C A C G T A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCATTAATTCTTGTCA
GGAGGTCATTAATTAT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCATTAATTCTTGTCA
GANGTAATTAATTANN----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T A C G T A C G T A C G T A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCATTAATTCTTGTCA
GANTTAATTAATTAANN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T A C G T A C G T A C G T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TCATTAATTCTTGTCA
CNNAGTAATTAATTNNC----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C A C G T A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCATTAATTCTTGTCA
TGTAATTAATTATGG---
 A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G A C G T A C G T A C G T

PH0146.1_Pou3f1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCATTAATTCTTGTCA
NANTTAATTAATTANNN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T A C G T A C G T A C G T

PH0106.1_Msx1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCATTAATTCTTGTCA
NNATTAATTAGTNGNN
 A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A
C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A