Information for 22-CAAGGAGAATAGG (Motif 39)

A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G
p-value:1e-3
log p-value:-7.554e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets20.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAAGGAGAATAGG
-AAGAGGATTAG-
 A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAAGGAGAATAGG
CAAGGHCANV---
 A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGAATAGG
TTGACCGAGAATTCC
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGAATAGG
BTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAAGGAGAATAGG---
-GAGGTCAAAAGGTCA
 A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T
A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGAATAGG
NTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAAGGAGAATAGG---
AAAGGTCAAAAGGTCA
 A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CAAGGAGAATAGG
TCAAGGTCATA---
 A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CAAGGAGAATAGG--
NNNNNGAACAATTGANN
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CAAGGAGAATAGG
---GAACAATGGN
 A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A A C G T C G T A A C T G A C T G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G