Information for 16-AGGAAHAADTCTC (Motif 26)

C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
Reverse Opposite:
C T A G C T G A A C T G C G T A G C T A C G A T A C G T C T A G A C G T G A C T A T G C A T G C A G C T
p-value:1e-5
log p-value:-1.272e+01
Information Content per bp:1.729
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif191.5
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets37.8 +/- 24.9bp
Average Position of motif in Background49.7 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGAAHAADTCTC
GGCCATAAATCAC
 C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGAAHAADTCTC
GGCCATAAATCA-
 C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGAAHAADTCTC
GGCCATAAATCA-
 C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGAAHAADTCTC--
TNCNNAACAATTTTTNC
 A C G T A C G T C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PB0165.1_Sox11_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGGAAHAADTCTC
NNCNNAACAATTNT-
 A C G T A C G T C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGGAAHAADTCTC-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGGAAHAADTCTC
---AACAAT----
 C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGAAHAADTCTC
-GCCATAAATCA-
 C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGGAAHAADTCTC
---AATAATT---
 C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGGAAHAADTCTC--
-----CAAATCACTG
 C T G A A T C G A T C G C T G A C G T A G A T C C G T A C G T A C A G T A C G T A G T C G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G