Information for 15-GGCAGACAGRCAG (Motif 25)

A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G
Reverse Opposite:
G T A C A C G T T A C G A G T C A G T C C G A T C T A G A G C T A G T C A C G T A T C G A G T C A G T C
p-value:1e-5
log p-value:-1.299e+01
Information Content per bp:1.730
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif48.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets30.9 +/- 27.3bp
Average Position of motif in Background47.5 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGACAGRCAG
TGGCAGNCTGCCAG
 A C G T A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCAGACAGRCAG
AGGTGNCAGACAG
 A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGACAGRCAG-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCAGACAGRCAG
-CCAGACAG----
 A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GGCAGACAGRCAG
AGGTGHCAGACA-----
 A C G T A C G T A C G T A C G T A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCAGACAGRCAG
TGGCACCATGCCAA
 A C G T A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCAGACAGRCAG---
GGGRAARRGRMCAGMTG
 A C G T A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G A C G T A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGACAGRCAG
TNNGGGCAG--------
 A C G T A C G T A C G T A C G T A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGCAGACAGRCAG----
--NNNACCGAGAGTNNN
 A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGCAGACAGRCAG--
-----ACAGGAAGTG
 A C T G C T A G A T G C G T C A C T A G T C G A A G T C C G T A A C T G C T A G A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G