Information for 5-GGCHATATTGTTDTCA (Motif 9)

A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A
Reverse Opposite:
G A C T A T C G C G T A G A T C G T C A C T G A G T A C C G T A C T G A A C G T C G T A A C G T C G T A C T A G A G T C G T A C
p-value:1e-8
log p-value:-1.861e+01
Information Content per bp:1.749
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.05%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.5 +/- 24.2bp
Average Position of motif in Background50.0 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0067.1_Sox18_1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGCHATATTGTTDTCA--
--TTCAATTGTTCTAAAA
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A A C G T A C G T
A C G T A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGCHATATTGTTDTCA
-CTAATATTGCTAAA-
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGCHATATTGTTDTCA
-CTAATATTGCTAAA-
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGCHATATTGTTDTCA--
----TAATTGTTCTAAAC
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGCHATATTGTTDTCA-
-AANTTATTGTTCTNNA
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A A C G T
A C G T C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GGCHATATTGTTDTCA
------ATTGTTA---
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGCHATATTGTTDTCA-
-NNTTTATTGTTCTNNN
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A A C G T
A C G T G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GGCHATATTGTTDTCA
------ATTGTTTAN-
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GGCHATATTGTTDTCA---
----GTNTTGTTGTGANNT
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GGCHATATTGTTDTCA
------ATTGTT----
 A C T G C T A G A G T C G A C T C G T A A C G T C G T A A G C T A C G T A C T G A G C T C A G T C A T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T